AllelicImbalance
This is the development version of AllelicImbalance; for the stable release version, see AllelicImbalance.
Investigates Allele Specific Expression
Bioconductor version: Development (3.20)
Provides a framework for allelic specific expression investigation using RNA-seq data.
Author: Jesper R Gadin, Lasse Folkersen
Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>
Citation (from within R, enter
citation("AllelicImbalance")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AllelicImbalance")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AllelicImbalance")
AllelicImbalance Vignette | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Genetics, Infrastructure, Sequencing, Software |
Version | 1.43.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL-3 |
Depends | R (>= 4.0.0), grid, GenomicRanges(>= 1.31.8), SummarizedExperiment(>= 0.2.0), GenomicAlignments(>= 1.15.6) |
Imports | methods, BiocGenerics, AnnotationDbi, BSgenome(>= 1.47.3), VariantAnnotation(>= 1.25.11), Biostrings(>= 2.47.6), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), Rsamtools(>= 1.99.3), GenomicFeatures(>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme |
System Requirements | |
URL | https://github.com/pappewaio/AllelicImbalance |
Bug Reports | https://github.com/pappewaio/AllelicImbalance/issues |
See More
Suggests | testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AllelicImbalance_1.43.0.tar.gz |
Windows Binary | AllelicImbalance_1.43.0.zip |
macOS Binary (x86_64) | AllelicImbalance_1.43.0.tgz |
macOS Binary (arm64) | AllelicImbalance_1.43.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AllelicImbalance |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AllelicImbalance |
Bioc Package Browser | https://code.bioconductor.org/browse/AllelicImbalance/ |
Package Short Url | https://bioconductor.org/packages/AllelicImbalance/ |
Package Downloads Report | Download Stats |