To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationDbi")

In most cases, you don't need to download the package archive at all.

AnnotationDbi

This is the development version of AnnotationDbi; for the stable release version, see AnnotationDbi.

Annotation Database Interface

Bioconductor version: Development (3.4)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationDbi")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationDbi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationDbi")

PDF		AnnotationDbi: Introduction To Bioconductor Annotation Packages
PDF		How to use bimaps from the ".db" annotation packages
PDF		Reference Manual
Video		Using AnnotationDb objects

Details

biocViews	Annotation, GenomeAnnotation, Microarray, Sequencing, Software
Version	1.35.4
In Bioconductor since	BioC 2.1 (R-2.6) (9 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils, stats4, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), IRanges
Imports	methods, utils, DBI, RSQLite, stats4, BiocGenerics, Biobase, S4Vectors(>= 0.9.25), IRanges
LinkingTo
Suggests	DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me	a4Base, a4Preproc, annotate, AnnotationForge, AnnotationFuncs, ASpli, attract, Category, chimera, DEXSeq, EGSEA, eisa, ExpressionView, FEM, GenomicFeatures, GGdata, GOFunction, goProfiles, maPredictDSC, MGFM, miRNAtap, MLP, OrganismDbi, PAnnBuilder, pathRender, PGSEA, proBAMr, RpsiXML, safe, SemDist, tinesath1probe, topGO
Imports Me	adSplit, affycoretools, affylmGUI, AllelicImbalance, annaffy, AnnotationHub, AnnotationHubData, beadarray, biomaRt, BioNet, biovizBase, bumphunter, CancerMutationAnalysis, categoryCompare, ccmap, cellity, cheung2010, ChIPpeakAnno, ChIPseeker, clusterProfiler, CoCiteStats, compEpiTools, CrispRVariants, crossmeta, csaw, debrowser, derfinder, DeSousa2013, domainsignatures, DOSE, dSimer, EDASeq, eegc, EnrichmentBrowser, ensembldb, erma, ExpressionView, gage, gCMAPWeb, genefilter, geneplotter, GenVisR, GGBase, ggbio, GGtools, GlobalAncova, globaltest, GOFunction, GOSemSim, GOSim, GOstats, goTools, gQTLstats, graphite, GSEABase, Gviz, gwascat, HTSanalyzeR, InPAS, interactiveDisplay, IVAS, keggorthology, KEGGprofile, limmaGUI, lumi, mAPKL, mdgsa, MeSHDbi, MetaboSignal, methyAnalysis, methylumi, MineICA, MiRaGE, mirIntegrator, miRNAmeConverter, mvGST, NanoStringQCPro, PADOG, PAnnBuilder, pathview, pcaExplorer, pcaGoPromoter, PCpheno, PGA, phenoTest, ppiData, pwOmics, qpgraph, RCAS, rCGH, ReactomePA, REDseq, ReportingTools, rgsepd, rTRM, ScISI, SGSeq, SLGI, SMITE, SpidermiR, SVM2CRM, tigre, ToPASeq, trackViewer, UniProt.ws, VariantAnnotation, VariantFiltering
Suggests Me	BiocCaseStudies, BiocGenerics, DEGreport, esetVis, FGNet, fgsea, gCrisprTools, geecc, GeneAnswers, GeneRegionScan, GenomicRanges, limma, miRLAB, MmPalateMiRNA, oligo, oligo, oneChannelGUI, piano, Pigengene, pRoloc, qcmetrics, R3CPET, recount, sigPathway, SummarizedExperiment
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationDbi_1.35.4.tar.gz
Windows Binary	AnnotationDbi_1.35.4.zip
Mac OS X 10.9 (Mavericks)	AnnotationDbi_1.35.4.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AnnotationDbi
Package Short Url	http://bioconductor.org/packages/AnnotationDbi/
Package Downloads Report	Download Stats

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