To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationDbi")

In most cases, you don't need to download the package archive at all.

AnnotationDbi

 

   

This is the development version of AnnotationDbi; for the stable release version, see AnnotationDbi.

Annotation Database Interface

Bioconductor version: Development (3.4)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationDbi")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationDbi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationDbi")

 

PDF AnnotationDbi: Introduction To Bioconductor Annotation Packages
PDF How to use bimaps from the ".db" annotation packages
PDF   Reference Manual
Video   Using AnnotationDb objects

Details

biocViews Annotation, GenomeAnnotation, Microarray, Sequencing, Software
Version 1.35.4
In Bioconductor since BioC 2.1 (R-2.6) (9 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, stats4, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), IRanges
Imports methods, utils, DBI, RSQLite, stats4, BiocGenerics, Biobase, S4Vectors(>= 0.9.25), IRanges
LinkingTo
Suggests DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me a4Base, a4Preproc, annotate, AnnotationForge, AnnotationFuncs, ASpli, attract, Category, chimera, DEXSeq, EGSEA, eisa, ExpressionView, FEM, GenomicFeatures, GGdata, GOFunction, goProfiles, maPredictDSC, MGFM, miRNAtap, MLP, OrganismDbi, PAnnBuilder, pathRender, PGSEA, proBAMr, RpsiXML, safe, SemDist, tinesath1probe, topGO
Imports Me adSplit, affycoretools, affylmGUI, AllelicImbalance, annaffy, AnnotationHub, AnnotationHubData, beadarray, biomaRt, BioNet, biovizBase, bumphunter, CancerMutationAnalysis, categoryCompare, ccmap, cellity, cheung2010, ChIPpeakAnno, ChIPseeker, clusterProfiler, CoCiteStats, compEpiTools, CrispRVariants, crossmeta, csaw, debrowser, derfinder, DeSousa2013, domainsignatures, DOSE, dSimer, EDASeq, eegc, EnrichmentBrowser, ensembldb, erma, ExpressionView, gage, gCMAPWeb, genefilter, geneplotter, GenVisR, GGBase, ggbio, GGtools, GlobalAncova, globaltest, GOFunction, GOSemSim, GOSim, GOstats, goTools, gQTLstats, graphite, GSEABase, Gviz, gwascat, HTSanalyzeR, InPAS, interactiveDisplay, IVAS, keggorthology, KEGGprofile, limmaGUI, lumi, mAPKL, mdgsa, MeSHDbi, MetaboSignal, methyAnalysis, methylumi, MineICA, MiRaGE, mirIntegrator, miRNAmeConverter, mvGST, NanoStringQCPro, PADOG, PAnnBuilder, pathview, pcaExplorer, pcaGoPromoter, PCpheno, PGA, phenoTest, ppiData, pwOmics, qpgraph, RCAS, rCGH, ReactomePA, REDseq, ReportingTools, rgsepd, rTRM, ScISI, SGSeq, SLGI, SMITE, SpidermiR, SVM2CRM, tigre, ToPASeq, trackViewer, UniProt.ws, VariantAnnotation, VariantFiltering
Suggests Me BiocCaseStudies, BiocGenerics, DEGreport, esetVis, FGNet, fgsea, gCrisprTools, geecc, GeneAnswers, GeneRegionScan, GenomicRanges, limma, miRLAB, MmPalateMiRNA, oligo, oligo, oneChannelGUI, piano, Pigengene, pRoloc, qcmetrics, R3CPET, recount, sigPathway, SummarizedExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationDbi_1.35.4.tar.gz
Windows Binary AnnotationDbi_1.35.4.zip
Mac OS X 10.9 (Mavericks) AnnotationDbi_1.35.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AnnotationDbi
Package Short Url http://bioconductor.org/packages/AnnotationDbi/
Package Downloads Report Download Stats

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