AnVIL
This is the development version of AnVIL; for the stable release version, see AnVIL.
Bioconductor on the AnVIL compute environment
Bioconductor version: Development (3.22)
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.
Author: Marcel Ramos [aut, cre]
, Martin Morgan [aut]
, Kayla Interdonato [aut], Yubo Cheng [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("AnVIL")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AnVIL")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVIL")| Dockstore and Bioconductor for AnVIL | HTML | R Script |
| Introduction to the AnVIL package | HTML | R Script |
| Running an AnVIL workflow within R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.21.5 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0), dplyr, AnVILBase |
| Imports | stats, utils, methods, futile.logger, jsonlite, httr, rapiclient, yaml, tibble, shiny, DT, miniUI, htmltools, BiocBaseUtils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools, AnVILAz, AnVILGCP, lifecycle |
| Linking To | |
| Enhances | |
| Depends On Me | cBioPortalData |
| Imports Me | AnVILPublish, AnVILWorkflow, bedbaser, terraTCGAdata |
| Suggests Me | AnVILBase, AnVILGCP |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnVIL_1.21.5.tar.gz |
| Windows Binary (x86_64) | AnVIL_1.21.5.zip |
| macOS Binary (x86_64) | AnVIL_1.21.5.tgz |
| macOS Binary (arm64) | AnVIL_1.21.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnVIL |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnVIL |
| Bioc Package Browser | https://code.bioconductor.org/browse/AnVIL/ |
| Package Short Url | https://bioconductor.org/packages/AnVIL/ |
| Package Downloads Report | Download Stats |