GeneStructureTools

This is the development version of GeneStructureTools; for the stable release version, see GeneStructureTools.

Tools for spliced gene structure manipulation and analysis

Bioconductor version: Development (3.19)

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, enter citation("GeneStructureTools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GeneStructureTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics
Version	1.23.0
In Bioconductor since	BioC 3.7 (R-3.5) (6 years)
License	BSD_3_clause + file LICENSE
Depends
Imports	Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
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Depends On Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneStructureTools
Package Short Url	https://bioconductor.org/packages/GeneStructureTools/
Package Downloads Report	Download Stats