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BSgenome.Mmusculus.UCSC.mm10

This is the development version of BSgenome.Mmusculus.UCSC.mm10; for the stable release version, see BSgenome.Mmusculus.UCSC.mm10.

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)


Bioconductor version: Development (3.20)

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Mus_musculus
Version 1.4.3
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome(>= 1.60.0)
Imports BSgenome
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me BSgenome.Mmusculus.UCSC.mm10.masked
Imports Me ATACCoGAPS, epiregulon, musicatk, BSgenome.Mmusculus.UCSC.mm10.masked
Suggests Me AneuFinder, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, plyinteractions, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting, ICAMS
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
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