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GenomicTuples

This is the development version of GenomicTuples; for the stable release version, see GenomicTuples.

Representation and Manipulation of Genomic Tuples


Bioconductor version: Development (3.19)

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GenomicTuples")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")
GenomicTuplesIntroduction HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.37.1
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 4.0), GenomicRanges(>= 1.37.4), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25)
Imports methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.19.13), data.table, stats4, stats, utils
System Requirements
URL www.github.com/PeteHaitch/GenomicTuples
Bug Reports https://github.com/PeteHaitch/GenomicTuples/issues
See More
Suggests testthat, knitr, BiocStyle, rmarkdown, covr, GenomicAlignments, Biostrings
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicTuples_1.37.1.tar.gz
Windows Binary GenomicTuples_1.37.1.zip
macOS Binary (x86_64) GenomicTuples_1.37.1.tgz
macOS Binary (arm64) GenomicTuples_1.37.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicTuples
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicTuples
Bioc Package Browser https://code.bioconductor.org/browse/GenomicTuples/
Package Short Url https://bioconductor.org/packages/GenomicTuples/
Package Downloads Report Download Stats