GenomicTuples

DOI: 10.18129/B9.bioc.GenomicTuples    

Representation and Manipulation of Genomic Tuples

Bioconductor version: Release (3.8)

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Hervé Pagès.

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomicTuples", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")

 

HTML R Script GenomicTuplesIntroduction
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License Artistic-2.0
Depends R (>= 3.3.0), GenomicRanges(>= 1.31.8), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25)
Imports methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.13.13), data.table, stats4
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL www.github.com/PeteHaitch/GenomicTuples
BugReports https://github.com/PeteHaitch/GenomicTuples/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicTuples_1.16.0.tar.gz
Windows Binary GenomicTuples_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GenomicTuples_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicTuples
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicTuples
Package Short Url http://bioconductor.org/packages/GenomicTuples/
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