MCbiclust
This is the development version of MCbiclust; for the stable release version, see MCbiclust.
Massive correlating biclusters for gene expression data and associated methods
Bioconductor version: Development (3.21)
Custom made algorithm and associated methods for finding, visualising and analysing biclusters in large gene expression data sets. Algorithm is based on with a supplied gene set of size n, finding the maximum strength correlation matrix containing m samples from the data set.
Author: Robert Bentham
Maintainer: Robert Bentham <robert.bentham.11 at ucl.ac.uk>
citation("MCbiclust")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MCbiclust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MCbiclust")
Introduction to MCbiclust | HTML | R Script |
Reference Manual |
Details
biocViews | Clustering, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod |
Version | 1.31.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
License | GPL-2 |
Depends | R (>= 3.4) |
Imports | BiocParallel, graphics, utils, stats, AnnotationDbi, GO.db, org.Hs.eg.db, GGally, ggplot2, scales, cluster, WGCNA |
System Requirements | |
URL |
See More
Suggests | gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr, pander, devtools, testthat, GSVA |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MCbiclust_1.31.0.tar.gz |
Windows Binary (x86_64) | MCbiclust_1.31.0.zip |
macOS Binary (x86_64) | MCbiclust_1.31.0.tgz |
macOS Binary (arm64) | MCbiclust_1.31.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MCbiclust |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MCbiclust |
Bioc Package Browser | https://code.bioconductor.org/browse/MCbiclust/ |
Package Short Url | https://bioconductor.org/packages/MCbiclust/ |
Package Downloads Report | Download Stats |