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MsBackendMgf

This is the development version of MsBackendMgf; for the stable release version, see MsBackendMgf.

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files


Bioconductor version: Development (3.19)

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] , Johannes Rainer [aut] , Sebastian Gibb [aut] , Michael Witting [ctb] , Adriano Rutz [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMgf")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")
Description and usage of MsBackendMgf HTML R Script
Reference Manual PDF

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.11.2
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Artistic-2.0
Depends R (>= 4.0), Spectra(>= 1.5.14)
Imports ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
System Requirements
URL https://github.com/RforMassSpectrometry/MsBackendMgf
Bug Reports https://github.com/RforMassSpectrometry/MsBackendMgf/issues
See More
Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me CompoundDb, MsBackendRawFileReader, xcms
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMgf_1.11.2.tar.gz
Windows Binary MsBackendMgf_1.11.2.zip
macOS Binary (x86_64) MsBackendMgf_1.11.2.tgz
macOS Binary (arm64) MsBackendMgf_1.11.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendMgf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMgf
Bioc Package Browser https://code.bioconductor.org/browse/MsBackendMgf/
Package Short Url https://bioconductor.org/packages/MsBackendMgf/
Package Downloads Report Download Stats