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ProtGenerics

This is the development version of ProtGenerics; for the stable release version, see ProtGenerics.

Generic infrastructure for Bioconductor mass spectrometry packages


Bioconductor version: Development (3.19)

S4 generic functions and classes needed by Bioconductor proteomics packages.

Author: Laurent Gatto <laurent.gatto at uclouvain.be>, Johannes Rainer <johannes.rainer at eurac.edu>

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("ProtGenerics")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ProtGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, MassSpectrometry, Proteomics, Software
Version 1.35.2
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends methods
Imports
System Requirements
URL https://github.com/RforMassSpectrometry/ProtGenerics
See More
Suggests testthat
Linking To
Enhances
Depends On Me Cardinal, MsExperiment, MSnbase, Spectra, topdownr
Imports Me CompoundDb, ensembldb, matter, MetaboAnnotation, MsBackendMassbank, MsBackendSql, MsFeatures, MSnID, MsQuality, mzID, mzR, PSMatch, QFeatures, xcms
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProtGenerics_1.35.2.tar.gz
Windows Binary ProtGenerics_1.35.2.zip
macOS Binary (x86_64) ProtGenerics_1.35.2.tgz
macOS Binary (arm64) ProtGenerics_1.35.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ProtGenerics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProtGenerics
Bioc Package Browser https://code.bioconductor.org/browse/ProtGenerics/
Package Short Url https://bioconductor.org/packages/ProtGenerics/
Package Downloads Report Download Stats