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MultiDataSet

This is the development version of MultiDataSet; for the stable release version, see MultiDataSet.

Implementation of MultiDataSet and ResultSet


Bioconductor version: Development (3.19)

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Xavier Escrib<c3><a0> Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("MultiDataSet")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MultiDataSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiDataSet")
Adding a new type of data to MultiDataSet objects HTML R Script
Introduction to MultiDataSet HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, Software
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License file LICENSE
Depends R (>= 4.1), Biobase
Imports BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma
System Requirements
URL
See More
Suggests brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment
Linking To
Enhances
Depends On Me MEAL
Imports Me biosigner, omicRexposome, phenomis, ropls
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiDataSet_1.31.0.tar.gz
Windows Binary MultiDataSet_1.31.0.zip (64-bit only)
macOS Binary (x86_64) MultiDataSet_1.31.0.tgz
macOS Binary (arm64) MultiDataSet_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiDataSet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiDataSet
Bioc Package Browser https://code.bioconductor.org/browse/MultiDataSet/
Package Short Url https://bioconductor.org/packages/MultiDataSet/
Package Downloads Report Download Stats