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brgedata

This is the development version of brgedata; for the stable release version, see brgedata.

Exposures, Gene Expression and Methylation data for ilustration purpouses


Bioconductor version: Development (3.19)

This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.

Author: Dolors Pelegri-Siso [aut, cre], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Citation (from within R, enter citation("brgedata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("brgedata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brgedata")
brgedata -- data R package with three omic data-set and exposome data-set from the same Spanish pupulation HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.25.0
License MIT + file LICENSE
Depends R (>= 3.5.0), Biobase
Imports SummarizedExperiment
System Requirements
URL
See More
Suggests minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me MEAL, MultiDataSet, omicRexposome
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package brgedata_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/brgedata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brgedata
Package Short Url https://bioconductor.org/packages/brgedata/
Package Downloads Report Download Stats