To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")

In most cases, you don't need to download the package archive at all.

NetSAM

DOI: 10.18129/B9.bioc.NetSAM    

This is the development version of NetSAM; for the stable release version, see NetSAM.

Network Seriation And Modularization

Bioconductor version: Development (3.6)

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Citation (from within R, enter citation("NetSAM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")

 

PDF R Script NetSAM
PDF   Reference Manual

Details

biocViews Network, Software, Visualization
Version 1.17.0
In Bioconductor since BioC 2.13 (R-3.0) (4 years)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source NetSAM_1.17.0.tar.gz
Windows Binary NetSAM_1.17.0.zip
Mac OS X 10.11 (El Capitan) NetSAM_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NetSAM
Package Short Url http://bioconductor.org/packages/NetSAM/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: