To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")

In most cases, you don't need to download the package archive at all.

RnaSeqSampleSize

DOI: 10.18129/B9.bioc.RnaSeqSampleSize    

This is the development version of RnaSeqSampleSize; for the stable release version, see RnaSeqSampleSize.

RnaSeqSampleSize

Bioconductor version: Development (3.7)

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Citation (from within R, enter citation("RnaSeqSampleSize")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnaSeqSampleSize")

 

PDF R Script RnaSeqSampleSize: Sample size estimation by real data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL (>= 2)
Depends R (>= 2.10), RnaSeqSampleSizeData
Imports biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo Rcpp
Suggests BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RnaSeqSampleSize_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RnaSeqSampleSize_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Package Short Url http://bioconductor.org/packages/RnaSeqSampleSize/
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