DOI: 10.18129/B9.bioc.compEpiTools    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of compEpiTools; for the stable release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: Development (3.15)

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut, cre]

Maintainer: Kamal Kishore <kamal.fartiyal84 at>

Citation (from within R, enter citation("compEpiTools")):


To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.29.2
In Bioconductor since BioC 3.0 (R-3.1) (7.5 years)
License GPL
Depends R (>= 3.1.1), methods, topGO, GenomicRanges
Imports AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb
Suggests BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene,, knitr, rtracklayer
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