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isomiRs

This is the development version of isomiRs; for the stable release version, see isomiRs.

Analyze isomiRs and miRNAs from small RNA-seq


Bioconductor version: Development (3.19)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("isomiRs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")
miRNA and isomiR analysis HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License MIT + file LICENSE
Depends R (>= 4.0), SummarizedExperiment
Imports AnnotationDbi, assertive.sets, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble
System Requirements
URL
Bug Reports https://github.com/lpantano/isomiRs/issues
See More
Suggests knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package isomiRs_1.31.0.tar.gz
Windows Binary isomiRs_1.31.0.zip (64-bit only)
macOS Binary (x86_64) isomiRs_1.31.0.tgz
macOS Binary (arm64) isomiRs_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/isomiRs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/isomiRs
Bioc Package Browser https://code.bioconductor.org/browse/isomiRs/
Package Short Url https://bioconductor.org/packages/isomiRs/
Package Downloads Report Download Stats