Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: Development (3.0)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

To install this package, start R and enter:


Citation (from within R, enter citation("rTRM")):


PDF R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS


biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 2.10), igraph (>= 0.7), RSQLite
Imports AnnotationDbi
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
System Requirements
Depends On Me
Imports Me rTRMui
Suggests Me

Package Downloads

Package Source rTRM_1.3.0.tar.gz
Windows Binary rTRM_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rTRM_1.3.0.tgz
Mac OS X 10.9 (Mavericks) rTRM_1.3.0.tgz
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