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This is the development version of scmeth; for the stable release version, see scmeth.

Functions to conduct quality control analysis in methylation data

Bioconductor version: Development (3.19)

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

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biocViews DNAMethylation, ImmunoOncology, Preprocessing, QualityControl, SingleCell, Software
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.5.0)
Imports knitr, rmarkdown, bsseq, AnnotationHub, GenomicRanges, reshape2, stats, utils, BSgenome, DelayedArray(>= 0.5.15), annotatr, SummarizedExperiment(>= 1.5.6), GenomeInfoDb, Biostrings, DT, HDF5Array(>= 1.7.5)
System Requirements
Bug Reports https://github.com/aryeelab/scmeth/issues
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Suggests BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase, BiocGenerics, ggplot2, ggthemes
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Source Package scmeth_1.23.0.tar.gz
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