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reactome.db

This is the development version of reactome.db; for the stable release version, see reactome.db.

A set of annotation maps for reactome


Bioconductor version: Development (3.20)

A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.

Author: Willem Ligtenberg

Maintainer: Willem Ligtenberg <willem at 42analytics.eu>

Citation (from within R, enter citation("reactome.db")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("reactome.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, FunctionalAnnotation
Version 1.88.0
License CC BY 4.0
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.33.0)
Imports methods, AnnotationDbi
System Requirements
URL
Bug Reports https://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues
See More
Suggests RSQLite
Linking To
Enhances
Depends On Me
Imports Me attract, bioCancer, famat, methylGSA, ReactomePA, scTensor, signatureSearch, SMITE
Suggests Me AnnotationDbi, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PCAN, PhosR, rGREAT, safe, simplifyEnrichment, sparrow, BaseSet, rliger
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package reactome.db_1.88.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/reactome.db/
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