DeSousa2013
This is the development version of DeSousa2013; for the stable release version, see DeSousa2013.
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
Bioconductor version: Development (3.20)
This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.
Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>
Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>
Citation (from within R, enter
citation("DeSousa2013")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DeSousa2013")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeSousa2013")
Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions | R Script | |
Reference Manual |
Details
biocViews | CancerData, ColonCancerData, ExperimentData, MicroarrayData |
Version | 1.41.0 |
License | Artistic-2.0 |
Depends | R (>= 2.15) |
Imports | affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DeSousa2013_1.41.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/DeSousa2013 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DeSousa2013 |
Package Short Url | https://bioconductor.org/packages/DeSousa2013/ |
Package Downloads Report | Download Stats |