GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: Release (2.14)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

To cite this package in a publication, start R and enter:

    citation("GEOquery")

Documentation

PDF R Script GEOquery
PDF   Reference Manual

Details

biocViews DataImport, Microarray, OneChannel, SAGE, Software, TwoChannel
Version 2.30.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL-2
Depends methods, Biobase
Imports XML, RCurl
Suggests limma
System Requirements
URL https://github.com/seandavi/GEOquery
Depends On Me DrugVsDisease, dyebiasexamples, GEOmetadb, SCAN.UPC
Imports Me BeadArrayUseCases, ChIPXpress, SRAdb, virtualArray
Suggests Me antiProfilesData, dyebias, ELBOW, GeneExpressionSignature, parathyroid, parathyroidSE, PGSEA, TargetScore

Package Downloads

Package Source GEOquery_2.30.0.tar.gz
Windows Binary GEOquery_2.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GEOquery_2.30.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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