omicsPrint

DOI: 10.18129/B9.bioc.omicsPrint    

Cross omic genetic fingerprinting

Bioconductor version: Release (3.8)

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("omicsPrint", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")

 

HTML R Script omicsPrint: detection of data linkage errors in multiple omics studies
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Epigenetics, GeneticVariability, Genetics, QualityControl, Software, Transcription, Transcriptomics
Version 1.2.0
License GPL (>= 2)
Depends R (>= 3.5), MASS
Imports methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package omicsPrint_1.2.0.tar.gz
Windows Binary omicsPrint_1.2.0.zip
Mac OS X 10.11 (El Capitan) omicsPrint_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/omicsPrint
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/omicsPrint
Package Short Url http://bioconductor.org/packages/omicsPrint/
Package Downloads Report Download Stats

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