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TENxPBMCData

PBMC data from 10X Genomics


Bioconductor version: Release (3.18)

Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.

Author: Kasper D. Hansen [aut], Davide Risso [aut], Milan Malfait [ctb], Jeroen Gilis [ctb], Theodore Killian [ctb], Murat Cem Kose [ctb], Chong Tang [ctb], Teun van den Brand [ctb], Dania Machlab [ctb], Stephanie Hicks [aut, cre]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("TENxPBMCData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxPBMCData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxPBMCData")
Obtaining scRNA-seq data on PBMCs from 10X Genomics HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.20.0
License CC BY 4.0
Depends SingleCellExperiment, HDF5Array
Imports AnnotationHub, ExperimentHub
System Requirements
URL
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Suggests rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel
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Enhances
Depends On Me OSCA.multisample, SingleRBook
Imports Me singleCellTK
Suggests Me adverSCarial, ASURAT, celda, concordexR, decontX, ExperimentSubset, fcoex, glmGamPoi, iSEE, mbkmeans, schex, scone, scry, transformGamPoi
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxPBMCData_1.20.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxPBMCData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxPBMCData
Package Short Url https://bioconductor.org/packages/TENxPBMCData/
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