DOI: 10.18129/B9.bioc.celda    

CEllular Latent Dirichlet Allocation

Bioconductor version: Release (3.9)

celda leverages Bayesian hierarchical modeling to cluster genes, cells, or both simultaneously from single cell sequencing data.

Author: Joshua Campbell [aut, cre], Sean Corbett [aut], Yusuke Koga [aut], Zhe Wang [aut]

Maintainer: Joshua Campbell <camp at bu.edu>

Citation (from within R, enter citation("celda")):


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HTML R Script Analyzing single-cell RNA-seq count data with celda
HTML R Script Estimate and remove cross-contamination from ambient RNA for scRNA-seq data with DecontX
PDF   Reference Manual
Text   NEWS


biocViews Bayesian, Clustering, GeneExpression, Sequencing, SingleCell, Software
Version 1.0.4
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports stats, plyr, foreach, ggplot2, RColorBrewer, grid, scales, gtable, grDevices, graphics, matrixStats, doParallel, digest, gridExtra, methods, reshape2, MAST, S4Vectors, data.table, Rcpp, RcppEigen, umap, enrichR, stringi, SummarizedExperiment, MCMCprecision, ggrepel, Rtsne, withr
LinkingTo Rcpp, RcppEigen
Suggests testthat, knitr, roxygen2, rmarkdown, corrplot, Matrix, biomaRt, covr, M3DExampleData, BiocManager, BiocStyle
BugReports https://github.com/campbio/celda/issues
Depends On Me
Imports Me
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Package Archives

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Source Package celda_1.0.4.tar.gz
Windows Binary celda_1.0.4.zip
Mac OS X 10.11 (El Capitan) celda_1.0.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/celda
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/celda
Package Short Url https://bioconductor.org/packages/celda/
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Old Source Packages for BioC 3.9 Source Archive

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