DOI: 10.18129/B9.bioc.circRNAprofiler    

This is the development version of circRNAprofiler; to use it, please install the devel version of Bioconductor.

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Bioconductor version: Development (3.10)

R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.

Author: Simona Aufiero

Maintainer: Simona Aufiero <simo.aufiero at>

Citation (from within R, enter citation("circRNAprofiler")):


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biocViews Annotation, DifferentialExpression, FunctionalPrediction, GenePrediction, GenomeAssembly, Software, StructuralPrediction
Version 0.99.13
In Bioconductor since BioC 3.10 (R-3.6)
License GPL-3
Depends R (>= 3.6.0), gwascat
Imports dplyr, magrittr, readr, rtracklayer, stringr, Biostrings, BSgenome, stringi, DESeq2, edgeR, GenomicRanges, IRanges, seqinr, R.utils, reshape2, ggplot2, utils, rlang, S4Vectors, stats, AnnotationHub, GenomeInfoDb, BSgenome.Hsapiens.UCSC.hg19
Suggests testthat, knitr, roxygen2, rmarkdown, citr, devtools, gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10
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