To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

In most cases, you don't need to download the package archive at all.

gwascat

 

   

This is the development version of gwascat; for the stable release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Bioconductor version: Development (3.5)

Represent and model data in the EMBL-EBI GWAS catalog.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gwascat")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwascat")

 

PDF R Script gwascat -- exploring NHGRI GWAS catalog
HTML R Script gwascat: exploring GWAS results using the experimental factor ontology
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Software
Version 2.7.0
In Bioconductor since BioC 2.10 (R-2.15) (4.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), Homo.sapiens
Imports methods, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, snpStats, Biostrings, Rsamtools, rtracklayer, gQTLstats, Gviz, VariantAnnotation, AnnotationHub, AnnotationDbi, GenomicFeatures, graph, ggbio, ggplot2, SummarizedExperiment
LinkingTo
Suggests DO.db, DT, utils, knitr, RBGL, RUnit, GGtools
SystemRequirements
Enhances SNPlocs.Hsapiens.dbSNP144.GRCh37
URL
Depends On Me vtpnet
Imports Me
Suggests Me gQTLBase
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gwascat_2.7.0.tar.gz
Windows Binary gwascat_2.7.0.zip
Mac OS X 10.9 (Mavericks) gwascat_2.7.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gwascat
Package Short Url http://bioconductor.org/packages/gwascat/
Package Downloads Report Download Stats

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