Practical DNA Microarray Analysis
Heidelberg and Berlin 2003
Axel Benner1, Benedikt Brors2, Anja von Heydebreck3, Wolfgang Huber4, Ulrich Mansmann5, Florian Markowetz3, Jörg Rahnenführer6, Rainer Spang3
1 German Cancer
Research Center, Heidelberg, Central Unit Biostatistics;
2 German Cancer Research
Center, Heidelberg, Dep. Intelligent Bioinformatics Systems;
3 Max-Planck-Institute for
Molecular Genetics, Berlin, Dep. Computational Molecular Biology;
4 German Cancer Research
Center, Heidelberg, Dep. Molecular Genome Analysis;
5 Univ. of
Heidelberg, Institute for Medical Biometry;
6 Max-Plack-Institute for
Informatics, Saarbrücken.
Schedule
| Monday | ||
| 09.00-10.30 | First analysis steps | Wolfgang Huber |
| 11.00-12.30 | Differential gene expression | Anja von Heydebreck |
| 13.30-14.30 | First steps in R | Florian Markowetz |
| 14.45-17.00 | Exercises: Exploring cDNA data | Wolfgang Huber |
| Tuesday | ||
| 09.00-10.30 | Exploratory data analysis | Jörg Rahnenführer |
| 10.30-12.00 | Annotation | Benedikt Brors |
| 13.30-14.30 | BioConductor | Wolfgang Huber |
| 14.45-17.00 | Exercises: 2x2 factorial design | Wolfgang Huber |
| Wednesday | ||
| 09.00-10.15 | Molecular Diagnosis | Rainer Spang |
| 10.15-11.00 | Classification by Support Vector Machines | Florian Markowetz |
| 11.00-12.00 | Resampling and the bootstrap | Axel Benner |
| 13.30-17.00 | Exercises: classification | Florian Markowetz |
| Thursday | ||
| 09.00-11.00 | Design of microarray experiments | Ulrich Mansmann |
| 11.00-12.00 | Model Assessment and Selection | Axel Benner |
| 12.00-12.30 | Screening by ROC curve analysis | Axel Benner |
| 13.30-17.00 | Exercises: Model selection, Bootstrap | Ulrich
Mansmann Axel Benner |