Bioconductor Developer Meeting Europe
Heidelberg, Germany
2010-11-17 ~ 2010-11-18
Participants
- Simon Anders
- Daniela Beisser
- Florian Breitwieser
- Jonathan Cairns
- Vincent Carey
- Robert Castelo
- David Clayton
- Leonardo Collado-Torres
- Nicolas Delhomme
- Berger Fabrice
- Yue Fan
- Bernd Fischer
- Laurent Gatto
- Julian Gehring
- Florian Hahne
- Wolfgang Huber
- Holger Höfling
- Misha Kapushesky
- Georges Khazen
- Christian KOHLER
- Michael Lawrence
- Friedrich Leisch
- Anna Lesniewska
- Crispin Miller
- Martin Morgan
- Arne Mueller
- Michal Okoniewski
- Gregoire Pau
- Simon Perkins
- Michal Piotrowski
- Wolfgang Raffelsberger
- Oscar Reina Garcia
- Alejandro Reyes
- Charles Roosen
- Anthony Rossini
- Ingo Ruczinski
- Jesper Ryge
- Mike Smith
- Stefanie Tauber
- Martin Telefont
- Per Unneberg
- Simon Urbanek
- Maarten van Iterson
- Mireia Vilardell
- Xin Wang
- Kathi Zarnack
- Xian Zhang
- Ing. Rolf Čábelka
Description
This meeting was aimed at Bioconductor contributors and at users who want to become package developers. The goal of the meeting was exchange of technical experiences and new developments, and the coordination of related efforts.
Talks
Bioconductor News
Martin Morgan - New Developments in Bioconductor
Vince Carey - Selected developments in microarray processing and general annotation
Visualization
Michael Lawrence - Qt and R
Wolfgang Huber - Interactive reports with DHTML, SVG, Javascript
Gregoire Pau - Exploration of high-throughput image-based assays with imageHTS
Sequencing
Simon Anders - DESeq for Alternative Splicing
Michal Okoniewski and Anna Lesniewska - Lightweight RNAseq analysis with BioConductor
Oscar Reina Garcia - High-Throughput Sequencing data analysis with R and Bioconductor
Genotyping
Ingo Ruczinski - Genotype and DNA copy number estimation (SNPchip, VanillaICE)
David Clayton - Developments snpMatrix
Statistics
Robert Castelo - Network inference with ‘qpgraph’: recent developments and future challenges
Jesper Ryge - Circular statistics for eletrophysiology recordings
Maarten van Iterson - SSPA - Pilot data based sensitivity analysis for high-dimensional data
Reproducible Research in Practice
Vince Carey - Experimental data packages
Proteomics and metabolomics
Laurent Gatto - Mass Spectrometry and Proteomics/Metabolomics using R and Bioconductor
Laurent Gatto - Labelled quantitative proteomics with MSnbase
Laurent Gatto - Sub-cellular localisation of proteins with pRoloc
Florian Breitwieser - Mass spectrometry Proteomics and MIAPE
Yue Fan - digeR: a graphical user interface R package for analyzing 2D-DIGE (gel) data
Arrays
Wolfgang Raffelsberger - gxTools: Automating Transcriptome Analysis
Julian Gehring - Identifying Loci of Enhanced Significance in Tiling Microarray Data
Leonardo Collado-Torres - Transcription initiation mapping and transcription unit identification in E. coli
GSEA
Daniela Beisser - BioNet - Routines for the functional analysis of biological networks
Imaging
Xian Zhang - Phenotypic dissimilarity analysis for high-content screening
Scalability and Performance
Martin Morgan - Efficient R Programming/Parallelization
Other Talks
Martin Morgan - Reference Classes in R