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AnVILPublish

This is the development version of AnVILPublish; for the stable release version, see AnVILPublish.

Publish Packages and Other Resources to AnVIL Workspaces


Bioconductor version: Development (3.19)

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Author: Marcel Ramos [aut, cre] , Martin Morgan [aut] , Kayla Interdonato [aut], Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("AnVILPublish")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILPublish")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILPublish")
Publishing R / Bioconductor packages to AnVIL Workspaces HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.13.3
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Depends
Imports AnVIL, BiocBaseUtils, BiocManager, httr, jsonlite, rmarkdown, yaml, readr, whisker, tools, utils, stats
System Requirements
URL
See More
Suggests knitr, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILPublish_1.13.3.tar.gz
Windows Binary AnVILPublish_1.13.3.zip
macOS Binary (x86_64) AnVILPublish_1.13.3.tgz
macOS Binary (arm64) AnVILPublish_1.13.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILPublish
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILPublish
Bioc Package Browser https://code.bioconductor.org/browse/AnVILPublish/
Package Short Url https://bioconductor.org/packages/AnVILPublish/
Package Downloads Report Download Stats