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ArrayExpress

This is the development version of ArrayExpress; for the stable release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet


Bioconductor version: Development (3.19)

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")
ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.63.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports oligo, limma, httr, utils, jsonlite, rlang, tools, methods
System Requirements
URL
See More
Suggests affy
Linking To
Enhances
Depends On Me DrugVsDisease, maEndToEnd
Imports Me
Suggests Me Hiiragi2013
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ArrayExpress_1.63.0.tar.gz
Windows Binary ArrayExpress_1.63.0.zip
macOS Binary (x86_64) ArrayExpress_1.63.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress
Bioc Package Browser https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report Download Stats