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This is the development version of BBCAnalyzer; for the stable release version, see BBCAnalyzer.

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Bioconductor version: Development (3.20)

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

Author: Sarah Sandmann

Maintainer: Sarah Sandmann <sarah.sandmann at>

Citation (from within R, enter citation("BBCAnalyzer")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Using BBCAnalyzer PDF R Script
Reference Manual PDF


biocViews Alignment, Coverage, GeneticVariability, SNP, Sequencing, Software
Version 1.35.0
In Bioconductor since BioC 3.2 (R-3.2) (9 years)
License LGPL-3
Imports SummarizedExperiment, VariantAnnotation, Rsamtools, grDevices, GenomicRanges, IRanges, Biostrings
System Requirements
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Suggests BSgenome.Hsapiens.UCSC.hg19
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Follow Installation instructions to use this package in your R session.

Source Package BBCAnalyzer_1.35.0.tar.gz
Windows Binary
macOS Binary (x86_64) BBCAnalyzer_1.35.0.tgz
macOS Binary (arm64) BBCAnalyzer_1.35.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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