BioCartaImage

This is the development version of BioCartaImage; for the stable release version, see BioCartaImage.

BioCarta Pathway Images

Bioconductor version: Development (3.19)

The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioCartaImage")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioCartaImage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioCartaImage")

Customize BioCarta Pathway Images	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BioCarta, Pathways, Software, Visualization
Version	1.1.0
In Bioconductor since	BioC 3.18 (R-4.3) (0.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.3.0)
Imports	magick, grid, stats, grDevices, utils
System Requirements
URL	https://github.com/jokergoo/BioCartaImage
Bug Reports	https://github.com/jokergoo/BioCartaImage/issues

Suggests	testthat, knitr, BiocStyle, ragg
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioCartaImage_1.1.0.tar.gz
Windows Binary	BioCartaImage_1.1.0.zip
macOS Binary (x86_64)	BioCartaImage_1.1.0.tgz
macOS Binary (arm64)	BioCartaImage_1.1.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioCartaImage
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioCartaImage
Bioc Package Browser	https://code.bioconductor.org/browse/BioCartaImage/
Package Short Url	https://bioconductor.org/packages/BioCartaImage/
Package Downloads Report	Download Stats