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BridgeDbR

This is the development version of BridgeDbR; for the stable release version, see BridgeDbR.

Code for using BridgeDb identifier mapping framework from within R


Bioconductor version: Development (3.19)

Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>, Tooba Abbassi-Daloii

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("BridgeDbR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BridgeDbR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BridgeDbR")
Tutorial HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Cheminformatics, Metabolomics, Software
Version 2.13.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License AGPL-3
Depends R (>= 3.3.0), rJava
Imports curl
System Requirements
URL https://github.com/bridgedb/BridgeDbR
Bug Reports https://github.com/bridgedb/BridgeDbR/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BridgeDbR_2.13.0.tar.gz
Windows Binary BridgeDbR_2.13.0.zip (64-bit only)
macOS Binary (x86_64) BridgeDbR_2.13.0.tgz
macOS Binary (arm64) BridgeDbR_2.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BridgeDbR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BridgeDbR
Bioc Package Browser https://code.bioconductor.org/browse/BridgeDbR/
Package Short Url https://bioconductor.org/packages/BridgeDbR/
Package Downloads Report Download Stats