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This is the development version of CTdata; for the stable release version, see CTdata.

Data companion to CTexploreR

Bioconductor version: Development (3.19)

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] , Julie Devis [aut] , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Cancer Testis Datasets HTML R Script
Reference Manual PDF


biocViews DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.2)
Imports ExperimentHub, utils
System Requirements
Bug Reports https://github.com/UCLouvain-CBIO/CTdata/issues
See More
Suggests testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment
Linking To
Depends On Me CTexploreR
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTdata_1.3.0.tar.gz
Windows Binary CTdata_1.3.0.zip (64-bit only)
macOS Binary (x86_64) CTdata_1.3.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser https://code.bioconductor.org/browse/CTdata/
Package Short Url https://bioconductor.org/packages/CTdata/
Package Downloads Report Download Stats