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This is the development version of EnrichedHeatmap; for the stable release version, see EnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: Development (3.20)

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu < at>

Citation (from within R, enter citation("EnrichedHeatmap")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

1. Make Enriched Heatmaps HTML R Script
2. Visualize Categorical Signals HTML R Script
3. Compare row ordering methods HTML R Script
4. Visualize Comprehensive Associations in Roadmap dataset HTML R Script
Reference Manual PDF


biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.35.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), methods, grid, ComplexHeatmap(>= 2.11.0), GenomicRanges
Imports matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges
System Requirements
See More
Suggests testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer
Linking To Rcpp
Depends On Me
Imports Me profileplyr
Suggests Me ComplexHeatmap, epistack, extraChIPs, InteractiveComplexHeatmap
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnrichedHeatmap_1.35.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) EnrichedHeatmap_1.35.0.tgz
macOS Binary (arm64) EnrichedHeatmap_1.35.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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