EnrichedHeatmap
This is the development version of EnrichedHeatmap; for the stable release version, see EnrichedHeatmap.
Making Enriched Heatmaps
Bioconductor version: Development (3.20)
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("EnrichedHeatmap")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EnrichedHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EnrichedHeatmap")
1. Make Enriched Heatmaps | HTML | R Script |
2. Visualize Categorical Signals | HTML | R Script |
3. Compare row ordering methods | HTML | R Script |
4. Visualize Comprehensive Associations in Roadmap dataset | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Coverage, GenomeAnnotation, Sequencing, Software, Visualization |
Version | 1.35.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6.0), methods, grid, ComplexHeatmap(>= 2.11.0), GenomicRanges |
Imports | matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges |
System Requirements | |
URL | https://github.com/jokergoo/EnrichedHeatmap |
See More
Suggests | testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | profileplyr |
Suggests Me | ComplexHeatmap, epistack, extraChIPs, InteractiveComplexHeatmap |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EnrichedHeatmap_1.35.0.tar.gz |
Windows Binary | EnrichedHeatmap_1.35.0.zip |
macOS Binary (x86_64) | EnrichedHeatmap_1.35.0.tgz |
macOS Binary (arm64) | EnrichedHeatmap_1.35.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EnrichedHeatmap |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EnrichedHeatmap |
Bioc Package Browser | https://code.bioconductor.org/browse/EnrichedHeatmap/ |
Package Short Url | https://bioconductor.org/packages/EnrichedHeatmap/ |
Package Downloads Report | Download Stats |