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This is the development version of GSEABase; for the stable release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: Development (3.19)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An introduction to GSEABase HTML R Script
Reference Manual PDF


biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version 1.65.1
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
System Requirements
See More
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit
Linking To
Depends On Me AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, GSVAdata, npGSEA, PROMISE, splineTimeR, TissueEnrich
Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cellHTS2, cosmosR, dreamlet, EnrichmentBrowser, escape, gep2pep, GlobalAncova, GmicR, GSRI, GSVA, mastR, miRSM, mogsa, msigdb, oppar, PanomiR, phenoTest, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, singleCellTK, singscore, SingscoreAMLMutations, slalom, sparrow, TFutils, vissE, zenith
Suggests Me BiocSet, gage, globaltest, GOstats, GSAR, GSEAlm, MAST, phenoTest
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSEABase_1.65.1.tar.gz
Windows Binary GSEABase_1.65.1.zip (64-bit only)
macOS Binary (x86_64) GSEABase_1.65.1.tgz
macOS Binary (arm64) GSEABase_1.65.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSEABase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSEABase
Bioc Package Browser https://code.bioconductor.org/browse/GSEABase/
Package Short Url https://bioconductor.org/packages/GSEABase/
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