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HPAanalyze

This is the development version of HPAanalyze; for the stable release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas


Bioconductor version: Development (3.19)

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")
1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze HTML R Script
2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze HTML R Script
3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries HTML R Script
4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline HTML R Script
5. Tutorial: Export Human Protein Atlas (HPA) data as JSON HTML R Script
6. Tutorial: Download histology images from the Human Protein Atlas HTML R Script
99. Code for figures from HPAanalyze paper HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBiology, Proteomics, Software, Visualization
Version 1.21.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
System Requirements
URL https://github.com/anhtr/HPAanalyze
Bug Reports https://github.com/anhtr/HPAanalyze/issues
See More
Suggests knitr, rmarkdown, markdown, devtools, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.21.0.tar.gz
Windows Binary HPAanalyze_1.21.0.zip
macOS Binary (x86_64) HPAanalyze_1.21.0.tgz
macOS Binary (arm64) HPAanalyze_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report Download Stats