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Herper

This is the development version of Herper; for the stable release version, see Herper.

The Herper package is a simple toolset to install and manage conda packages and environments from R


Bioconductor version: Development (3.19)

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

Author: Matt Paul [aut] , Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]

Maintainer: Thomas Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("Herper")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Herper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Herper")
Quick Start HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.13.1
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0), reticulate
Imports utils, rjson, withr, stats
System Requirements
URL https://github.com/RockefellerUniversity/Herper
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Herper_1.13.1.tar.gz
Windows Binary
macOS Binary (x86_64) Herper_1.13.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Herper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Herper
Bioc Package Browser https://code.bioconductor.org/browse/Herper/
Package Short Url https://bioconductor.org/packages/Herper/
Package Downloads Report Download Stats