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This is the development version of INSPEcT; for the stable release version, see INSPEcT.

Modeling RNA synthesis, processing and degradation with RNA-seq data

Bioconductor version: Development (3.19)

INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.

Author: Stefano de Pretis

Maintainer: Stefano de Pretis <ste.depo at gmail.com>, Mattia Furlan <Mattia.Furlan at iit.it>

Citation (from within R, enter citation("INSPEcT")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

INSPEcT - INference of Synthesis, Processing and dEgradation rates from Transcriptomic data HTML R Script
INSPEcT_GUI.html HTML R Script
Reference Manual PDF


biocViews GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse
Version 1.33.1
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.6), methods, Biobase, BiocParallel
Imports pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors, GenomeInfoDb, DESeq2, plgem, rtracklayer, SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
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Suggests BiocStyle, knitr, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package INSPEcT_1.33.1.tar.gz
Windows Binary INSPEcT_1.33.1.zip
macOS Binary (x86_64) INSPEcT_1.33.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/INSPEcT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/INSPEcT
Bioc Package Browser https://code.bioconductor.org/browse/INSPEcT/
Package Short Url https://bioconductor.org/packages/INSPEcT/
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