KEGGREST

DOI: 10.18129/B9.bioc.KEGGREST    

This is the development version of KEGGREST; for the stable release version, see KEGGREST.

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Bioconductor version: Development (3.13)

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Jeremy Volkening [ctb], Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("KEGGREST")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")

 

HTML R Script Accessing the KEGG REST API
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, KEGG, Pathways, Software, ThirdPartyClient
Version 1.31.1
In Bioconductor since BioC 2.12 (R-3.0) (7.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, httr, png, Biostrings
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL
Depends On Me Hiiragi2013, ROntoTools
Imports Me ADAM, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, gage, KEGGlincs, KEGGprofile, MetaboSignal, MWASTools, NoRCE, PADOG, pathview, RnaSeqSampleSize, SMITE, transomics2cytoscape, YAPSA
Suggests Me globaltest, iSEEu, padma
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGREST_1.31.1.tar.gz
Windows Binary KEGGREST_1.31.1.zip
macOS 10.13 (High Sierra) KEGGREST_1.31.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/KEGGREST
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGREST
Package Short Url https://bioconductor.org/packages/KEGGREST/
Package Downloads Report Download Stats

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