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LinkHD

This is the development version of LinkHD; for the stable release version, see LinkHD.

LinkHD: a versatile framework to explore and integrate heterogeneous data


Bioconductor version: Development (3.19)

Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.

Author: Laura M. Zingaretti [aut, cre]

Maintainer: "Laura M Zingaretti" <m.lau.zingaretti at gmail.com>

Citation (from within R, enter citation("LinkHD")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LinkHD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LinkHD")
Annotating Genomic Variants HTML R Script
Reference Manual PDF

Details

biocViews Classification, MultipleComparison, Regression, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6.0), methods, ggplot2, stats
Imports scales, cluster, graphics, ggpubr, gridExtra, vegan, rio, MultiAssayExperiment, emmeans, reshape2, data.table
System Requirements
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Suggests MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LinkHD_1.17.0.tar.gz
Windows Binary LinkHD_1.17.0.zip (64-bit only)
macOS Binary (x86_64) LinkHD_1.17.0.tgz
macOS Binary (arm64) LinkHD_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LinkHD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LinkHD
Bioc Package Browser https://code.bioconductor.org/browse/LinkHD/
Package Short Url https://bioconductor.org/packages/LinkHD/
Package Downloads Report Download Stats