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MACSr

This is the development version of MACSr; for the stable release version, see MACSr.

MACS: Model-based Analysis for ChIP-Seq


Bioconductor version: Development (3.19)

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Citation (from within R, enter citation("MACSr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")
MACSr HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ATACSeq, ChIPSeq, ImmunoOncology, Software
Version 1.11.2
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License BSD_3_clause + file LICENSE
Depends R (>= 4.1.0)
Imports utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, MACSdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSr_1.11.2.tar.gz
Windows Binary
macOS Binary (x86_64) MACSr_1.11.2.tgz
macOS Binary (arm64) MACSr_1.11.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MACSr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSr
Bioc Package Browser https://code.bioconductor.org/browse/MACSr/
Package Short Url https://bioconductor.org/packages/MACSr/
Package Downloads Report Download Stats