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This is the development version of MSstatsQC; for the stable release version, see MSstatsQC.

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: Development (3.20)

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

Maintainer: Eralp Dogu <eralp.dogu at>

Citation (from within R, enter citation("MSstatsQC")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

MSstatsQC HTML R Script
Reference Manual PDF


biocViews MassSpectrometry, Proteomics, QualityControl, Software
Version 2.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic License 2.0
Depends R (>= 3.5.0)
Imports dplyr, plotly, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics
System Requirements
Bug Reports!forum/msstatsqc
See More
Suggests knitr, rmarkdown, testthat, RforProteomics
Linking To
Depends On Me
Imports Me MSstatsQCgui
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsQC_2.23.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) MSstatsQC_2.23.0.tgz
macOS Binary (arm64) MSstatsQC_2.23.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
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