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MetaboCoreUtils

This is the development version of MetaboCoreUtils; for the stable release version, see MetaboCoreUtils.

Core Utils for Metabolomics Data


Bioconductor version: Development (3.19)

MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.

Author: Johannes Rainer [aut, cre] , Michael Witting [aut] , Andrea Vicini [aut], Liesa Salzer [ctb] , Sebastian Gibb [aut] , Michael Stravs [ctb] , Roger Gine [aut] , Philippine Louail [aut]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MetaboCoreUtils")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaboCoreUtils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaboCoreUtils")
Core Utils for Metabolomics Data HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Software
Version 1.11.2
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports utils, MsCoreUtils, BiocParallel, methods, stats
System Requirements
URL https://github.com/RforMassSpectrometry/MetaboCoreUtils
Bug Reports https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown, robustbase
Linking To
Enhances
Depends On Me
Imports Me CompoundDb, MetaboAnnotation, MobilityTransformR, Spectra, xcms
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaboCoreUtils_1.11.2.tar.gz
Windows Binary MetaboCoreUtils_1.11.2.zip
macOS Binary (x86_64) MetaboCoreUtils_1.11.2.tgz
macOS Binary (arm64) MetaboCoreUtils_1.11.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaboCoreUtils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaboCoreUtils
Bioc Package Browser https://code.bioconductor.org/browse/MetaboCoreUtils/
Package Short Url https://bioconductor.org/packages/MetaboCoreUtils/
Package Downloads Report Download Stats