MinimumDistance
This is the development version of MinimumDistance; for the stable release version, see MinimumDistance.
A Package for De Novo CNV Detection in Case-Parent Trios
Bioconductor version: Development (3.19)
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.
Author:
Maintainer: Robert Scharpf <rscharpf at jhu.edu>
Citation (from within R, enter
citation("MinimumDistance")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MinimumDistance")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, SNP, Software |
| Version | 1.47.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), VanillaICE(>= 1.47.1) |
| Imports | methods, BiocGenerics, MatrixGenerics, Biobase, S4Vectors(>= 0.23.18), IRanges, GenomeInfoDb, GenomicRanges(>= 1.17.16), SummarizedExperiment(>= 1.15.4), oligoClasses, DNAcopy, ff, foreach, matrixStats, lattice, data.table, grid, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | human610quadv1bCrlmm(>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, RUnit |
| Linking To | |
| Enhances | snow, doSNOW |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MinimumDistance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MinimumDistance |
| Package Short Url | https://bioconductor.org/packages/MinimumDistance/ |
| Package Downloads Report | Download Stats |