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This is the development version of MsDataHub; for the stable release version, see MsDataHub.

Mass Spectrometry Data on ExperimentHub

Bioconductor version: Development (3.19)

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

Author: Laurent Gatto [aut, cre] , Johannes Rainer [aut]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("MsDataHub")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Mass Spectrometry Data on ExperimentHub HTML R Script
Reference Manual PDF


biocViews ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Imports ExperimentHub, utils
System Requirements
URL https://rformassspectrometry.github.io/MsDataHub
Bug Reports https://github.com/RforMassSpectrometry/MsDataHub/issues
See More
Suggests ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsDataHub_1.3.0.tar.gz
Windows Binary MsDataHub_1.3.0.zip
macOS Binary (x86_64) MsDataHub_1.3.0.tgz
macOS Binary (arm64) MsDataHub_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsDataHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsDataHub
Bioc Package Browser https://code.bioconductor.org/browse/MsDataHub/
Package Short Url https://bioconductor.org/packages/MsDataHub/
Package Downloads Report Download Stats