Welcome to the new bioconductor.org!

MsDataHub

This is the development version of MsDataHub; for the stable release version, see MsDataHub.

Mass Spectrometry Data on ExperimentHub


Bioconductor version: Development (3.19)

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

Author: Laurent Gatto [aut, cre] , Johannes Rainer [aut]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("MsDataHub")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsDataHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsDataHub")
Mass Spectrometry Data on ExperimentHub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends
Imports ExperimentHub, utils
System Requirements
URL https://rformassspectrometry.github.io/MsDataHub
Bug Reports https://github.com/RforMassSpectrometry/MsDataHub/issues
See More
Suggests ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsDataHub_1.3.0.tar.gz
Windows Binary MsDataHub_1.3.0.zip
macOS Binary (x86_64) MsDataHub_1.3.0.tgz
macOS Binary (arm64) MsDataHub_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsDataHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsDataHub
Bioc Package Browser https://code.bioconductor.org/browse/MsDataHub/
Package Short Url https://bioconductor.org/packages/MsDataHub/
Package Downloads Report Download Stats