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PICS

This is the development version of PICS; for the stable release version, see PICS.

Probabilistic inference of ChIP-seq


Bioconductor version: Development (3.19)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")
The PICS users guide HTML R Script
Reference Manual PDF

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization
Version 2.47.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
System Requirements
URL https://github.com/SRenan/PICS
Bug Reports https://github.com/SRenan/PICS/issues
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Suggests rtracklayer, parallel, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.47.0.tar.gz
Windows Binary PICS_2.47.0.zip
macOS Binary (x86_64) PICS_2.47.0.tgz
macOS Binary (arm64) PICS_2.47.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Bioc Package Browser https://code.bioconductor.org/browse/PICS/
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats