PICS

DOI: 10.18129/B9.bioc.PICS    

This is the development version of PICS; for the stable release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: Development (3.11)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

HTML R Script The PICS users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization
Version 2.31.3
In Bioconductor since BioC 2.6 (R-2.11) (9.5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports methods, stats4, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
LinkingTo
Suggests rtracklayer, parallel, knitr
SystemRequirements
Enhances
URL https://github.com/SRenan/PICS
BugReports https://github.com/SRenan/PICS/issues
Depends On Me
Imports Me PING
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.31.3.tar.gz
Windows Binary PICS_2.31.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) PICS_2.31.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats

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