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Rarr

This is the development version of Rarr; for the stable release version, see Rarr.

Read Zarr Files in R


Bioconductor version: Development (3.19)

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("Rarr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rarr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rarr")
Working with Zarr arrays in R HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Software
Version 1.3.1
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License MIT + file LICENSE
Depends
Imports jsonlite, httr, stringr, R.utils, utils, paws.storage, methods
System Requirements GNU make
URL https://github.com/grimbough/Rarr
Bug Reports https://github.com/grimbough/Rarr/issues
See More
Suggests BiocStyle, covr, knitr, tinytest, mockery
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rarr_1.3.1.tar.gz
Windows Binary Rarr_1.3.1.zip (64-bit only)
macOS Binary (x86_64) Rarr_1.3.1.tgz
macOS Binary (arm64) Rarr_1.3.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rarr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rarr
Bioc Package Browser https://code.bioconductor.org/browse/Rarr/
Package Short Url https://bioconductor.org/packages/Rarr/
Package Downloads Report Download Stats