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Rbwa

This is the development version of Rbwa; for the stable release version, see Rbwa.

R wrapper for BWA-backtrack and BWA-MEM aligners


Bioconductor version: Development (3.19)

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("Rbwa")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rbwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbwa")
An introduction to Rbwa HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Alignment, Sequencing, Software
Version 1.7.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports
System Requirements GNU make
URL https://github.com/Jfortin1/Rbwa
Bug Reports https://github.com/crisprVerse/Rbwa/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me crisprBwa
Suggests Me crisprDesign
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbwa_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64) Rbwa_1.7.0.tgz
macOS Binary (arm64) Rbwa_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rbwa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbwa
Bioc Package Browser https://code.bioconductor.org/browse/Rbwa/
Package Short Url https://bioconductor.org/packages/Rbwa/
Package Downloads Report Download Stats