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RedeR

This is the development version of RedeR; for the stable release version, see RedeR.

Interactive visualization and manipulation of nested networks


Bioconductor version: Development (3.19)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.

Author: Xin Wang [ctb], Florian Markowetz [ctb], Mauro Castro [aut, cre]

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")
RedeR: nested networks HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version 2.99.3
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-3
Depends R (>= 4.0), methods
Imports scales, igraph
System Requirements Java Runtime Environment (Java>= 11)
URL https://doi.org/10.1186/gb-2012-13-4-r29
See More
Suggests knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf
Linking To
Enhances
Depends On Me Fletcher2013b
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me RGraphSpace
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_2.99.3.tar.gz
Windows Binary RedeR_2.99.3.zip
macOS Binary (x86_64) RedeR_2.99.3.tgz
macOS Binary (arm64) RedeR_2.99.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR
Bioc Package Browser https://code.bioconductor.org/browse/RedeR/
Package Short Url https://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats